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Soil Metagenomics Symposium

Soil life, land practice, shared methods

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Resource library

A short shelf for soil questions.

A curated set of public resources for soil ecology, land management, and metagenomics methods. Every link below leads to an independent organization. SOILS does not control or endorse their content.

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Use the search field or choose a category. The list is intentionally short; it favors stable public sources over exhaustive coverage.

Showing 48 resources

Soil institutions

FAO Soils Portal

A public entry point to FAO soil information, publications, and country data.

Visit the Soils Portal

Soil institutions

ISRIC World Soil Information

Soil data, maps, and reference collections from an independent research institute.

Visit ISRIC

Soil institutions

USDA Agricultural Research Service

Public soil and agricultural research from the United States Department of Agriculture.

Visit the service

Soil institutions

Soil Association

A United Kingdom charity working on soil health, farming, and land use.

Visit the charity

Soil institutions

British Society of Soil Science

A United Kingdom professional body for soil science, with events and public guidance.

Visit the society

Soil institutions

Canadian Society of Soil Science

A national society for soil scientists, with publications and public outreach.

Visit the society

Soil institutions

European Commission Soil Health

Public information on European soil policy, monitoring, and land management.

Visit the commission page

Biodiversity

Global Soil Biodiversity Initiative

A network linking soil biodiversity science with policy and land management.

Visit the initiative

Biodiversity

Global Soil Biodiversity Atlas

A public atlas of soil life, habitats, and threats from the European Soil Data Centre.

Open the atlas

Biodiversity

World Soil Museum

A reference collection of soil profiles and educational material at ISRIC.

Visit the museum

Biodiversity

GEO BON

The Group on Earth Observations Biodiversity Observation Network, with public biodiversity data.

Visit GEO BON

Biodiversity

IUCN

The International Union for Conservation of Nature, with public conservation knowledge.

Visit IUCN

Biodiversity

Catalogue of Life

An international index of known species and their taxonomy.

Visit the catalogue

Biodiversity

FAO Soil Biodiversity Portal

Public material on soil organisms, ecosystem functions, and land management.

Visit the portal

Biodiversity

Earth Microbiome Project

An open collaboration on global microbial samples, protocols, and data.

Visit the project

Methods

MGnify

A public resource for metagenomic analysis and browsing at the European Bioinformatics Institute.

Visit MGnify

Methods

QIIME 2

An open source microbiome analysis platform with documentation and tutorials.

Visit QIIME 2

Methods

GTDB

A taxonomy resource for bacteria and archaea based on genome sequences.

Visit GTDB

Methods

SILVA

A reference database for ribosomal RNA sequences and taxonomy.

Visit SILVA

Methods

NCBI

Public sequence, taxonomy, and literature databases from the United States National Library of Medicine.

Visit NCBI

Methods

European Nucleotide Archive

A public archive for nucleotide sequence data at the European Bioinformatics Institute.

Visit the archive

Methods

DADA2

An open source pipeline for amplicon sequence analysis in R.

Visit DADA2

Methods

Bioconductor

An open source collection of tools for the analysis of high throughput genomic data.

Visit Bioconductor

Methods

mothur

An open source package for microbial community sequence analysis.

Visit mothur

Methods

CRAN

The Comprehensive R Archive Network, with packages for statistics and data analysis.

Visit CRAN

Methods

Galaxy Project

An open platform for accessible data analysis workflows in the life sciences.

Visit the project

Journals and communities

Nature Reviews Microbiology

Review articles on microbial ecology, evolution, and applied microbiology.

Visit the journal

Journals and communities

Frontiers in Microbiology

An open access journal covering microbiology and its subfields.

Visit the journal

Journals and communities

ISME

The International Society for Microbial Ecology, with a journal and community events.

Visit ISME

Journals and communities

Microbiology Society

A membership organization with journals, events, and public policy work.

Visit the society

Journals and communities

American Society for Microbiology

A broad microbiology community with journals, policy work, and public education.

Visit the society

Journals and communities

European Geosciences Union

A geoscience union with public sessions and resources on soil systems.

Visit EGU

Journals and communities

Microbiome

An open access journal on microbial communities and their environments.

Visit the journal

Journals and communities

The ISME Journal

Research on microbial ecology across habitats, including soil and sediment.

Visit the journal

Journals and communities

Nature Microbiology

Research and review content on microbiology, including environmental communities.

Visit the journal

Journals and communities

Frontiers in Soil Science

An open access journal covering soil biology, chemistry, and management.

Visit the journal

Journals and communities

SOIL

An open access journal on soil science, published by Copernicus.

Visit the journal

Policy and land

UNCCD

The United Nations convention on desertification, land degradation, and drought.

Visit UNCCD

Policy and land

European Environment Agency Soil

Public reporting on European soil condition, land use, and environmental policy.

Visit the agency page

Policy and land

European Soil Data Centre

European soil maps, data, and research reports for policy and science.

Visit the data centre

Policy and land

World Meteorological Organization

The United Nations agency for weather, climate, and water, and a parent body of the IPCC.

Visit the organization

Policy and land

State of the World's Soil Resources

A public FAO assessment of soil condition, threats, and management options.

Open the assessment

Policy and land

Convention on Biological Diversity

An international agreement with material on soil biodiversity and ecosystems.

Visit the convention

Data and maps

OpenLandMap

Open global land and soil data products for mapping and analysis.

Visit OpenLandMap

Data and maps

SoilGrids

Global soil property maps at several depths, produced by ISRIC.

Visit SoilGrids

Data and maps

JRC Data Catalogue

Public data sets and maps from the European Commission Joint Research Centre.

Visit the catalogue

Using the library

Read widely, cite carefully

A resource list is not a literature review. Check the date, method, and scope of any source before using it in a proposal or a land decision.

For questions about the SOILS program, use the contact page rather than the external organizations listed here.

Ask the program team

Bring it to the room

Turn reading into a conversation.

Propose a poster, join a workshop, or bring a land question to the next gathering.